Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4341

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12708 and 12709 are separated by 62 nucleotides12709 and 12710 are separated by 498 nucleotides mRNA_4340: 12708 - K01074 PPT palmitoyl-protein thioesterase, at 1,947,671 to 1,949,110 12708 mRNA_4341: 12709 - K08266 MLST8, GBL target of rapamycin complex subunit LST8, at 1,949,173 to 1,951,155 12709 mRNA_4342: 12710 - K08801 PASK PAS domain containing serine/threonine kinase, at 1,951,654 to 1,955,244 12710

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,948,451 + 12708 mRNA_4340 0.54 -0.1
1,948,484 + 12708 mRNA_4340 0.56 -1.0
1,948,880 - 12708 mRNA_4340 0.84 +0.3
1,949,040 + +0.2
1,951,205 - +0.6
1,951,214 + -0.5
1,951,226 - +2.4
1,951,348 + +0.6
1,951,357 - +0.5
1,951,379 - +1.4
1,951,515 - +0.3
1,951,518 + +0.5
1,951,659 - +0.0
1,951,661 + +1.5
1,951,793 - +1.1
1,951,911 + +0.7
1,951,943 - -0.5
1,951,964 - -0.2
1,952,058 - 12710 mRNA_4342 0.11 +0.9

Or see this region's nucleotide sequence