Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4348

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12715 and 12716 are separated by 442 nucleotides mRNA_4347: 12715 - K03386 PRDX2_4, ahpC peroxiredoxin (alkyl hydroperoxide reductase subunit C), at 1,965,895 to 1,967,093 12715 mRNA_4348: 12716 - KOG2265 Nuclear distribution protein NUDC, at 1,967,536 to 1,968,862 12716

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,966,948 - 12715 mRNA_4347 0.88 -2.3
1,966,961 - 12715 mRNA_4347 0.89 -0.6
1,967,102 - -1.2
1,967,103 + -0.5
1,967,234 + +0.0
1,967,246 - -0.5
1,967,254 - -0.2
1,967,260 - +0.9
1,967,260 + -0.9
1,967,267 + +0.9
1,967,273 + +0.1
1,967,273 + +0.8
1,967,274 + +0.8
1,967,278 + +0.6
1,967,328 - +0.3
1,967,352 + +1.4
1,967,361 + +0.4
1,967,367 - -0.7
1,967,368 + +0.5
1,967,372 + -0.6
1,967,375 - -0.3
1,967,376 + +0.1
1,967,380 + +0.2
1,967,384 - +0.1
1,967,386 - -0.2
1,967,387 + +1.2
1,967,392 + +0.3
1,967,393 + +0.5
1,967,399 + +0.6
1,967,402 - +1.4
1,967,406 + -3.1
1,967,408 - +0.4
1,968,695 - 12716 mRNA_4348 0.87 +0.5
1,968,855 - -0.1
1,968,957 - +0.6
1,969,423 + +0.2
1,969,437 - -0.4
1,969,457 + +0.5
1,969,545 - -1.6
1,969,720 - +0.5
1,969,807 - +2.8
1,969,832 + +2.1

Or see this region's nucleotide sequence