Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4354

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12720 and 12721 are separated by 39 nucleotides12721 and 12722 are separated by 491 nucleotides mRNA_4352: 12720 - HMMPfam-Chromo (CHRromatin Organisation MOdifier) domain-PF00385,ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013,SUPERFAMILY--SSF54160, at 14,873 to 15,217 12720 mRNA_4353: 12721 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 15,257 to 15,583 12721 mRNA_4354: 12722 - BLAST polyprotein [Mycena chlorophos], at 16,075 to 16,311 12722

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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15,084 - 12720 mRNA_4352 0.61 +0.2
15,119 + 12720 mRNA_4352 0.71 +0.8
15,157 - 12720 mRNA_4352 0.82 +0.6
15,157 + 12720 mRNA_4352 0.82 +0.4
15,157 - 12720 mRNA_4352 0.82 +1.1
15,165 + 12720 mRNA_4352 0.85 -0.2
15,250 + -1.9
15,268 - -0.0
16,880 - +0.8
16,892 + -0.5
17,228 - +1.7

Or see this region's nucleotide sequence