Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4355

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_4355: 12723 - BLAST putative Ty3/Gypsy polyprotein/retrotransposon [Rhizo..., at 17,610 to 18,449 12723

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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16,880 - +0.8
16,892 + -0.5
17,228 - +1.7
17,379 + +0.7
17,437 - +2.1
17,683 - -1.1
17,683 - -0.1
17,766 - 12723 mRNA_4355 0.19 +0.6
17,819 + 12723 mRNA_4355 0.25 -0.1
17,912 + 12723 mRNA_4355 0.36 -1.6
17,912 + 12723 mRNA_4355 0.36 +0.7
17,912 + 12723 mRNA_4355 0.36 -0.2
17,932 - 12723 mRNA_4355 0.38 +1.7
17,973 - 12723 mRNA_4355 0.43 +0.4
18,667 - -1.8
18,725 - -1.0

Or see this region's nucleotide sequence