Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4370

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12737 and 12738 are separated by 405 nucleotides12738 and 12739 are separated by 484 nucleotides mRNA_4369: 12737 - K03671 trxA thioredoxin 1, at 29,253 to 29,815 12737 mRNA_4370: 12738 - HMMPfam-Purine nucleoside permease (NUP)-PF06516,PIRSF--PIRSF013171, at 30,221 to 32,027 12738 mRNA_4371: 12739 - K10877 RAD54B DNA repair and recombination protein RAD54B, at 32,512 to 35,317 12739

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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29,668 - 12737 mRNA_4369 0.74 +0.6
29,839 + -0.2
30,499 - 12738 mRNA_4370 0.15 +0.8
30,508 - 12738 mRNA_4370 0.16 -0.8
31,175 - 12738 mRNA_4370 0.53 +0.1
31,453 - 12738 mRNA_4370 0.68 -2.4
31,675 - 12738 mRNA_4370 0.80 +0.9
31,682 + 12738 mRNA_4370 0.81 -0.9
31,705 - 12738 mRNA_4370 0.82 +1.7
31,810 - 12738 mRNA_4370 0.88 -0.9
31,920 + +1.1
31,953 - +0.5
32,084 + +0.8
32,104 - +0.8
32,105 + +1.6
32,124 - +1.1
32,126 + -0.4
32,130 + -0.2
32,130 + -0.6
32,132 - -0.2
32,133 - -0.3
32,134 - -0.1
32,157 - -0.4
32,198 + +1.4
32,251 - +1.8
32,257 - -0.7
32,260 - +0.3
32,260 - -0.6
32,261 - +0.2
32,263 - -0.3
32,287 - -0.8
32,311 + +2.2
32,318 + -1.3
32,328 + +1.1
32,437 - +1.2
32,455 - -0.5
32,524 - +0.9
32,639 - -0.1
32,662 + -0.4
32,664 + -0.5
32,696 - +2.0
32,766 - +0.5
32,815 + 12739 mRNA_4371 0.11 +1.8
32,993 - 12739 mRNA_4371 0.17 +0.6

Or see this region's nucleotide sequence