Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4473

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12841 and 12842 are separated by 138 nucleotides mRNA_4473: 12841 - K19782 DSS1, MSU1 exoribonuclease II, mitochondrial, at 265,412 to 268,856 12841 mRNA_4474: 12842 - K01426 E3.5.1.4, amiE amidase, at 268,995 to 271,231 12842

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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264,501 - -0.9
264,502 - +0.6
264,592 - -0.8
264,740 - +1.8
264,748 + -2.0
264,764 + -0.6
265,041 - +0.8
265,049 + +0.7
265,188 - +1.8
265,200 + -0.5
265,202 + -1.3
265,335 - +1.4
268,960 - -2.7
269,057 + -0.5
269,062 + -0.2
269,122 + -0.4
269,245 + 12842 mRNA_4474 0.11 +2.2
269,318 - 12842 mRNA_4474 0.14 +0.6
269,330 - 12842 mRNA_4474 0.15 -0.9
269,403 + 12842 mRNA_4474 0.18 -0.2
269,417 + 12842 mRNA_4474 0.19 +0.6
269,420 + 12842 mRNA_4474 0.19 -0.7
269,432 + 12842 mRNA_4474 0.20 +2.0
269,554 - 12842 mRNA_4474 0.25 +2.8
269,575 - 12842 mRNA_4474 0.26 +0.0
269,612 + 12842 mRNA_4474 0.28 +0.9
269,675 + 12842 mRNA_4474 0.30 -0.8

Or see this region's nucleotide sequence