Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4481

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12848 and 12849 are separated by 199 nucleotides12849 and 12850 are separated by 315 nucleotides mRNA_4480: 12848 - Hypothetical Protein, at 283,832 to 284,551 12848 mRNA_4481: 12849 - Hypothetical Protein, at 284,751 to 285,386 12849 mRNA_4482: 12850 - K03144 TFIIH4, GTF2H4, TFB2 transcription initiation factor TFIIH subunit 4, at 285,702 to 287,837 12850

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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283,868 - -0.9
283,871 + +1.2
283,875 + -0.3
284,019 + 12848 mRNA_4480 0.26 -0.5
284,036 - 12848 mRNA_4480 0.28 +0.3
284,060 + 12848 mRNA_4480 0.32 +0.0
284,061 + 12848 mRNA_4480 0.32 +0.0
284,170 + 12848 mRNA_4480 0.47 +1.7
284,181 + 12848 mRNA_4480 0.48 +1.2
284,187 - 12848 mRNA_4480 0.49 +1.1
284,197 + 12848 mRNA_4480 0.51 +0.2
284,208 - 12848 mRNA_4480 0.52 +0.4
284,215 - 12848 mRNA_4480 0.53 -0.4
284,254 - 12848 mRNA_4480 0.59 -0.4
284,269 + 12848 mRNA_4480 0.61 +0.4
284,291 + 12848 mRNA_4480 0.64 +0.6
284,300 + 12848 mRNA_4480 0.65 +0.2
284,301 + 12848 mRNA_4480 0.65 +0.1
284,320 + 12848 mRNA_4480 0.68 +1.1
284,324 - 12848 mRNA_4480 0.68 +0.7
284,339 + 12848 mRNA_4480 0.70 +0.4
284,386 + 12848 mRNA_4480 0.77 +0.0
284,393 + 12848 mRNA_4480 0.78 +0.1
284,445 - 12848 mRNA_4480 0.85 +0.1
284,482 + -0.5
284,503 + +0.5
284,516 + +0.3
284,517 - -0.2
284,540 + +0.5
284,540 + +1.0
284,551 - +1.9
284,561 + -0.4
284,561 + +1.0
284,562 + -0.5
284,570 + +0.3
284,572 + -0.5
284,579 - -0.8
284,580 + -0.8
284,583 + +0.8
284,607 + +0.7
284,626 + -0.1
284,763 - +0.2
284,768 - +0.2
284,778 - +0.0
284,785 + -0.3
284,905 - 12849 mRNA_4481 0.24 -0.5
284,928 + 12849 mRNA_4481 0.28 -0.5
285,151 - 12849 mRNA_4481 0.63 -0.4
285,196 + 12849 mRNA_4481 0.70 +2.2
285,210 - 12849 mRNA_4481 0.72 +0.2
285,244 + 12849 mRNA_4481 0.78 +0.6
285,633 - +0.6
285,648 + +2.1

Or see this region's nucleotide sequence