Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4497

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12865 and 12866 are separated by 542 nucleotides mRNA_4497: 12865 - SUPERFAMILY--SSF81383, at 320,556 to 322,046 12865 mRNA_4498: 12866 - Hypothetical Protein, at 322,589 to 323,741 12866

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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319,751 + +0.6
319,773 + +0.1
319,775 - +0.5
320,103 + +0.4
320,123 - +2.4
320,124 + +1.9
320,124 + +0.8
320,127 - +0.5
320,297 - +1.3
320,384 - -2.2
320,390 + +1.0
320,410 - +0.9
320,549 - +2.1
320,661 + -1.0
320,874 + 12865 mRNA_4497 0.21 -0.3
320,974 - 12865 mRNA_4497 0.28 +0.3
320,978 + 12865 mRNA_4497 0.28 -0.2
321,120 - 12865 mRNA_4497 0.38 -1.1
321,180 - 12865 mRNA_4497 0.42 +1.8
321,182 - 12865 mRNA_4497 0.42 +1.1
321,250 + 12865 mRNA_4497 0.47 -0.0
321,326 - 12865 mRNA_4497 0.52 +1.6
321,447 - 12865 mRNA_4497 0.60 +0.3
321,590 - 12865 mRNA_4497 0.69 +0.5
321,880 + 12865 mRNA_4497 0.89 +1.1
321,914 - +1.0
322,028 - -0.3
322,035 - -0.0
322,050 + +0.8
322,103 - +1.4
322,123 + -0.1
322,423 - +1.0
322,674 + -2.2

Or see this region's nucleotide sequence