Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4540

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12907 and 12908 are separated by 181 nucleotides12908 and 12909 are separated by 873 nucleotides mRNA_4539: 12907 - HMMPfam-DNA polymerase subunit Cdc27-PF09507, at 410,744 to 412,303 12907 mRNA_4540: 12908 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 412,485 to 416,287 12908 mRNA_4541: 12909 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 417,161 to 419,747 12909

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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411,827 + 12907 mRNA_4539 0.69 +0.0
412,174 + -0.6
412,749 + +0.3
414,317 + 12908 mRNA_4540 0.48 +0.5
414,351 - 12908 mRNA_4540 0.49 -0.1
414,789 - 12908 mRNA_4540 0.61 -1.5
414,949 + 12908 mRNA_4540 0.65 -1.1
415,108 - 12908 mRNA_4540 0.69 +1.3
415,235 + 12908 mRNA_4540 0.72 -0.7
415,677 - 12908 mRNA_4540 0.84 +0.3
415,704 + 12908 mRNA_4540 0.85 +2.1
415,813 - 12908 mRNA_4540 0.88 -0.3
415,826 - 12908 mRNA_4540 0.88 -0.2
415,938 + +1.9
416,111 - +0.1
416,246 - +0.6
416,272 - +2.1
416,273 + +0.1
416,284 + -0.2
416,394 - -0.3
416,420 + +0.1
416,428 + -0.2
416,548 - +0.5
416,572 - +0.1
416,733 - +0.9
416,756 - +0.7
416,859 - -0.1
416,868 - -0.4
416,877 + +1.5
416,910 - -0.6
416,914 - -0.1
416,915 + -0.8
416,916 + +0.0

Or see this region's nucleotide sequence