Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4645

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13012 and 13013 are separated by 422 nucleotides13013 and 13014 are separated by 63 nucleotides mRNA_4644: 13012 - Hypothetical Protein, at 679,484 to 680,110 13012 mRNA_4645: 13013 - Hypothetical Protein, at 680,533 to 681,409 13013 mRNA_4646: 13014 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 681,473 to 684,221 13014

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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679,892 - 13012 mRNA_4644 0.65 -1.2
679,921 - 13012 mRNA_4644 0.70 +0.7
680,042 - 13012 mRNA_4644 0.89 +2.0
680,176 - +0.9
680,199 - +0.8
680,221 - +1.2
680,225 + +0.0
680,227 - +0.5
680,233 + -1.0
680,258 - +0.9
680,349 + -0.5
680,351 - -0.3
680,363 - +0.3
680,366 + +0.8
680,368 + -0.6
680,369 - -1.2
680,376 + +1.1
680,418 + -2.4
680,544 + -0.4
680,551 + +0.3
680,571 - +0.2
680,625 + 13013 mRNA_4645 0.10 +0.6
681,257 + 13013 mRNA_4645 0.83 -0.2
681,850 + 13014 mRNA_4646 0.14 +1.5
681,994 - 13014 mRNA_4646 0.19 +0.0
682,137 + 13014 mRNA_4646 0.24 +0.0
682,163 - 13014 mRNA_4646 0.25 +0.9
682,167 + 13014 mRNA_4646 0.25 -0.9
682,291 - 13014 mRNA_4646 0.30 -0.1
682,398 - 13014 mRNA_4646 0.34 +0.0

Or see this region's nucleotide sequence