Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4680

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13047 and 13048 are separated by 212 nucleotides mRNA_4679: 13047 - Hypothetical Protein, at 755,257 to 756,395 13047 mRNA_4680: 13048 - K01067 E3.1.2.1, ACH1 acetyl-CoA hydrolase, at 756,608 to 758,345 13048

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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755,753 - 13047 mRNA_4679 0.44 +0.1
755,910 - 13047 mRNA_4679 0.57 -0.4
756,191 + 13047 mRNA_4679 0.82 -0.8
756,191 + 13047 mRNA_4679 0.82 +0.7
756,223 - 13047 mRNA_4679 0.85 +0.6
757,254 + 13048 mRNA_4680 0.37 -0.2
757,374 - 13048 mRNA_4680 0.44 -0.1
757,412 + 13048 mRNA_4680 0.46 +0.0
757,537 - 13048 mRNA_4680 0.53 +1.4
758,719 - +0.1
758,725 + -0.2
758,726 - -0.6
758,728 + +0.3
758,744 + +0.2
758,891 + -0.3
759,001 + +0.7
759,003 - +1.5
759,015 + +1.2
759,027 - +1.1
759,029 - -0.1
759,031 - -1.0
759,158 - +0.7
759,166 + +0.7
759,185 + +1.3
759,214 - +0.4
759,292 - -0.4
759,299 - +0.5
759,335 - +0.3
759,340 - -0.6
759,343 + -0.4

Or see this region's nucleotide sequence