Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4701

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13068 and 13069 are separated by 479 nucleotides13069 and 13070 are separated by 197 nucleotides mRNA_4700: 13068 - BLAST putative mannoprotein [Rhizoctonia solani 123E], at 802,870 to 804,709 13068 mRNA_4701: 13069 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 805,189 to 806,290 13069 mRNA_4702: 13070 - K00870 E2.7.1.37 protein kinase, at 806,488 to 808,596 13070

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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804,357 - 13068 mRNA_4700 0.81 +0.8
804,361 + 13068 mRNA_4700 0.81 +0.1
804,381 - 13068 mRNA_4700 0.82 -1.9
804,510 + 13068 mRNA_4700 0.89 -0.5
804,518 - 13068 mRNA_4700 0.90 -0.5
804,525 + 13068 mRNA_4700 0.90 -0.4
804,634 - -0.1
804,660 - +0.1
804,672 + -0.5
804,678 - +0.6
804,791 - +0.2
804,804 - -1.1
804,816 - -0.2
804,821 + +0.2
804,821 + +0.0
804,822 - -0.2
804,826 + +1.2
804,831 + +0.2
804,839 + +1.8
804,841 - +2.2
804,847 + +0.2
804,850 - +1.2
804,858 + +0.4
804,863 + +0.5
804,878 - +0.6
804,888 - -0.4
804,895 + +1.5
805,036 - -0.4
805,045 - -0.1
805,045 + +0.7
805,054 + +1.3
805,064 + +0.3
805,068 - -0.4
805,071 + +2.0
805,084 + +1.0
805,086 + -0.8
805,088 - +0.3
805,110 + +1.3
805,142 - +0.3
805,161 - +0.3
805,181 - +0.9
805,225 + +0.9
805,242 - +0.6
805,257 + +2.3
805,267 - +0.1
805,274 + -1.1
805,276 - +0.5
805,278 - +1.5
805,284 + +0.1
805,289 + -1.1
805,293 + +0.0
805,295 - -0.6
805,413 - 13069 mRNA_4701 0.20 +1.2
805,440 - 13069 mRNA_4701 0.23 +0.4
805,842 - 13069 mRNA_4701 0.59 +0.8
805,948 + 13069 mRNA_4701 0.69 +0.1
806,179 - 13069 mRNA_4701 0.90 -1.0
806,253 - -1.2

Or see this region's nucleotide sequence