Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4719

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13086 and 13087 are separated by 283 nucleotides13087 and 13088 are separated by 283 nucleotides mRNA_4718: 13086 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 846,943 to 849,026 13086 mRNA_4719: 13087 - K18693 DPP1 diacylglycerol diphosphate phosphatase / phosphatidate phosphatase, at 849,310 to 850,936 13087 mRNA_4720: 13088 - K01415 ECE endothelin-converting enzyme, at 851,220 to 854,422 13088

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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848,387 + 13086 mRNA_4718 0.69 -0.1
848,394 - 13086 mRNA_4718 0.70 -0.4
848,397 - 13086 mRNA_4718 0.70 +0.3
848,954 - +0.7
848,954 - +0.1
849,097 - +1.2
849,256 - -0.4
849,260 + +0.1
849,275 + -0.7
849,279 - -0.8
849,280 - +0.6
849,367 + +1.4
849,381 + -0.0
849,401 - +0.5
849,404 - +1.9
849,431 - +1.2
849,434 + +0.3
849,570 - 13087 mRNA_4719 0.16 +0.7
849,598 + 13087 mRNA_4719 0.18 +1.3
849,621 + 13087 mRNA_4719 0.19 -1.0
849,702 - 13087 mRNA_4719 0.24 +0.4
849,743 - 13087 mRNA_4719 0.27 +0.9
849,802 + 13087 mRNA_4719 0.30 +0.1
849,822 - 13087 mRNA_4719 0.31 +0.6
849,826 + 13087 mRNA_4719 0.32 +0.6
850,012 + 13087 mRNA_4719 0.43 -1.6
850,128 - 13087 mRNA_4719 0.50 +1.5
850,133 - 13087 mRNA_4719 0.51 -0.4
850,418 + 13087 mRNA_4719 0.68 +0.6
850,421 - 13087 mRNA_4719 0.68 -0.2
850,551 - 13087 mRNA_4719 0.76 +0.6
850,993 - +0.9
851,104 - -0.9
851,332 - -0.2
851,602 - 13088 mRNA_4720 0.12 +0.6
851,665 - 13088 mRNA_4720 0.14 -0.3

Or see this region's nucleotide sequence