Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4758

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13125 and 13126 are separated by 273 nucleotides mRNA_4757: 13125 - Hypothetical Protein, at 937,399 to 937,793 13125 mRNA_4758: 13126 - HMMPfam-Autophagy-related protein 27-PF09451,SUPERFAMILY--SSF50911, at 938,067 to 939,280 13126

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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937,144 + -0.5
937,218 - -0.3
937,242 - +0.3
937,534 - 13125 mRNA_4757 0.34 -1.1
937,538 + 13125 mRNA_4757 0.35 +0.5
937,549 - 13125 mRNA_4757 0.38 +1.0
937,550 + 13125 mRNA_4757 0.38 -0.6
937,632 - 13125 mRNA_4757 0.59 -0.4
937,689 - 13125 mRNA_4757 0.73 +0.3
937,704 + 13125 mRNA_4757 0.77 -0.3
937,712 + 13125 mRNA_4757 0.79 +0.5
937,729 + 13125 mRNA_4757 0.84 +2.2
937,729 + 13125 mRNA_4757 0.84 -1.3
937,736 - 13125 mRNA_4757 0.85 +1.0
937,746 + 13125 mRNA_4757 0.88 +1.7
937,765 - +1.7
937,768 - -0.6
937,873 - +2.0
937,892 - -0.5
937,897 + -0.4
937,908 + -0.8
937,910 + +1.1
937,918 + +0.2
938,179 + +0.0
938,200 - 13126 mRNA_4758 0.11 -0.7
938,207 + 13126 mRNA_4758 0.12 +0.6
938,297 - 13126 mRNA_4758 0.19 +0.6
938,365 + 13126 mRNA_4758 0.25 +0.2
938,487 - 13126 mRNA_4758 0.35 -0.2
938,694 + 13126 mRNA_4758 0.52 +0.9
939,237 - +0.5
939,237 - -0.5
939,247 - -0.3
939,442 + +1.4
939,484 + +0.2
939,543 + -0.9
939,543 + +0.3
939,632 + +0.1
939,839 + +0.3
939,861 + -0.3
940,107 - +0.6
940,231 - +1.3
940,237 - -0.4

Or see this region's nucleotide sequence