Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4776

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13143 and 13144 are separated by 903 nucleotides13144 and 13145 are separated by 644 nucleotides mRNA_4775: 13143 - K01724 PCBD, phhB 4a-hydroxytetrahydrobiopterin dehydratase, at 989,386 to 989,809 13143 mRNA_4776: 13144 - Hypothetical Protein, at 990,713 to 991,663 13144 mRNA_4777: 13145 - Hypothetical Protein, at 992,308 to 993,106 13145

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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989,745 - 13143 mRNA_4775 0.85 -0.1
989,745 + 13143 mRNA_4775 0.85 +0.9
989,750 - 13143 mRNA_4775 0.86 +0.3
989,750 - 13143 mRNA_4775 0.86 +0.2
989,801 + -0.4
990,054 - +0.3
990,057 + +1.4
990,192 + -1.9
990,224 - +0.1
990,342 - -0.0
990,352 - +2.1
990,363 - +1.6
990,372 - -2.8
990,807 - -1.1
990,819 + 13144 mRNA_4776 0.11 +1.4
990,821 + 13144 mRNA_4776 0.11 -0.3
990,833 + 13144 mRNA_4776 0.13 -0.3
990,940 + 13144 mRNA_4776 0.24 +0.7
990,952 + 13144 mRNA_4776 0.25 +0.0
991,265 + 13144 mRNA_4776 0.58 -0.3
991,418 - 13144 mRNA_4776 0.74 +1.8
991,445 + 13144 mRNA_4776 0.77 +1.6
991,555 - 13144 mRNA_4776 0.89 +0.6
991,717 + +0.5
991,828 - -0.2
991,835 - +1.0
991,972 - +0.7
991,980 - -0.1
991,989 - +0.3
991,990 + -0.3
992,147 - +0.8
992,281 + -0.3

Or see this region's nucleotide sequence