Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4784

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13151 and 13152 are separated by 915 nucleotides13152 and 13153 are separated by 309 nucleotides mRNA_4783: 13151 - Hypothetical Protein, at 1,003,364 to 1,007,134 13151 mRNA_4784: 13152 - BLAST calmodulin-like protein [Mycena chlorophos], at 1,008,050 to 1,008,769 13152 mRNA_4785: 13153 - KOG1577 Aldo/keto reductase family proteins, at 1,009,079 to 1,010,386 13153

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,007,066 - +0.7
1,007,073 - +0.5
1,007,076 - -0.4
1,007,082 + +0.9
1,007,097 - +1.9
1,007,110 + -0.3
1,007,211 + -1.2
1,007,261 - +0.2
1,007,400 + -0.9
1,007,414 - +0.3
1,007,430 + -0.9
1,007,483 - +1.0
1,007,664 - +0.2
1,007,677 + -0.6
1,007,684 - +1.4
1,007,700 - -0.7
1,007,716 - +0.0
1,007,732 - +0.9
1,007,845 + +1.3
1,008,134 - 13152 mRNA_4784 0.12 +0.2
1,008,416 - 13152 mRNA_4784 0.51 -0.8
1,008,712 - +0.4
1,008,730 - +0.7
1,008,998 - +1.3
1,009,007 - -0.2
1,009,040 + +0.3
1,009,302 - 13153 mRNA_4785 0.17 +1.7
1,009,307 - 13153 mRNA_4785 0.17 -0.1
1,009,315 - 13153 mRNA_4785 0.18 -1.2
1,009,330 - 13153 mRNA_4785 0.19 +1.4
1,009,731 + 13153 mRNA_4785 0.50 +1.0

Or see this region's nucleotide sequence