Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4799

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13167 and 13168 are separated by 783 nucleotides mRNA_4799: 13167 - K05676 ABCD2, ALDL1 ATP-binding cassette, subfamily D (ALD), member 2, at 1,038,794 to 1,042,061 13167 mRNA_4800: 13168 - HMMPfam-Glycosyl transferases group 1-PF00534,SUPERFAMILY--SSF53756, at 1,042,845 to 1,046,169 13168

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,038,000 - +0.2
1,038,277 - +0.1
1,038,432 - -0.4
1,038,620 - +0.9
1,038,621 + -0.8
1,038,621 + +0.2
1,039,009 - -1.0
1,039,051 + +0.3
1,039,322 + 13167 mRNA_4799 0.16 +0.7
1,039,600 + 13167 mRNA_4799 0.25 -0.3
1,039,733 + 13167 mRNA_4799 0.29 -0.0
1,039,885 - 13167 mRNA_4799 0.33 +3.5
1,040,483 + 13167 mRNA_4799 0.52 +0.1
1,040,627 + 13167 mRNA_4799 0.56 -0.2
1,040,631 - 13167 mRNA_4799 0.56 +0.4
1,040,648 + 13167 mRNA_4799 0.57 -0.7
1,041,149 - 13167 mRNA_4799 0.72 +1.4
1,041,362 + 13167 mRNA_4799 0.79 -1.3
1,041,497 - 13167 mRNA_4799 0.83 +0.5
1,041,612 - 13167 mRNA_4799 0.86 -1.5
1,041,616 - 13167 mRNA_4799 0.86 +0.2
1,041,628 - 13167 mRNA_4799 0.87 +0.6
1,041,634 + 13167 mRNA_4799 0.87 +0.6
1,041,744 + -0.7
1,041,755 + +0.3
1,041,798 - +1.0
1,041,908 - -2.0
1,041,924 - +0.5
1,042,044 - +0.3
1,042,051 - -0.2
1,042,055 + +0.3
1,042,063 - +0.9
1,042,066 - -0.4
1,042,067 + +0.4
1,042,070 + +0.3
1,042,209 - +0.4
1,042,216 + -0.8
1,042,358 + -0.8
1,042,626 - +0.5
1,042,627 - -1.6
1,042,634 + -0.2
1,042,652 - +0.8
1,042,659 + +0.3
1,042,662 + +1.3
1,042,797 - +2.6

Or see this region's nucleotide sequence