Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4828

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13195 and 13196 are separated by 177 nucleotides13196 and 13197 are separated by 287 nucleotides mRNA_4827: 13195 - Hypothetical Protein, at 1,100,998 to 1,102,554 13195 mRNA_4828: 13196 - SUPERFAMILY--SSF52047, at 1,102,732 to 1,104,516 13196 mRNA_4829: 13197 - K01298 CPA2 carboxypeptidase A2, at 1,104,804 to 1,106,642 13197

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
1,101,934 - 13195 mRNA_4827 0.60 +0.1
1,102,172 + 13195 mRNA_4827 0.75 +0.3
1,102,323 + 13195 mRNA_4827 0.85 +0.0
1,102,437 + -1.1
1,102,454 - -1.1
1,102,488 + -2.0
1,102,588 - +1.8
1,102,612 - -0.6
1,102,644 - +0.7
1,102,791 + -0.5
1,102,875 - -0.3
1,102,879 + -1.0
1,102,881 + +1.1
1,102,895 - -0.1
1,103,076 + 13196 mRNA_4828 0.19 -0.6
1,103,450 - 13196 mRNA_4828 0.40 -0.2
1,103,452 + 13196 mRNA_4828 0.40 -1.5
1,103,897 - 13196 mRNA_4828 0.65 +0.5
1,103,928 + 13196 mRNA_4828 0.67 +0.1
1,104,032 - 13196 mRNA_4828 0.73 +0.1
1,104,039 + 13196 mRNA_4828 0.73 -1.0
1,104,083 + 13196 mRNA_4828 0.76 +1.6
1,104,354 - -0.7
1,104,366 - +0.9
1,104,516 - +0.8
1,104,680 - +1.3
1,104,825 + +0.3
1,105,345 - 13197 mRNA_4829 0.29 -0.2

Or see this region's nucleotide sequence