Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4859

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13227 and 13228 are separated by 247 nucleotides mRNA_4859: 13227 - Hypothetical Protein, at 1,163,089 to 1,163,880 13227 mRNA_4860: 13228 - K13237 DECR2 peroxisomal 2,4-dienoyl-CoA reductase, at 1,164,128 to 1,165,413 13228

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,162,279 - +0.7
1,162,296 + +0.5
1,162,296 + -0.1
1,163,002 + +0.8
1,163,129 - +0.8
1,163,465 + 13227 mRNA_4859 0.47 +0.1
1,163,465 - 13227 mRNA_4859 0.47 -0.5
1,163,573 - 13227 mRNA_4859 0.61 +2.6
1,163,580 - 13227 mRNA_4859 0.62 +0.2
1,164,050 + -1.0
1,164,052 + -1.2
1,164,078 - +0.1
1,164,097 - +0.8
1,164,241 - +2.4
1,164,242 - -0.7
1,164,376 + 13228 mRNA_4860 0.19 -0.3
1,164,517 - 13228 mRNA_4860 0.30 +0.8
1,164,527 + 13228 mRNA_4860 0.31 -1.8
1,164,649 - 13228 mRNA_4860 0.41 +0.1
1,164,663 - 13228 mRNA_4860 0.42 +0.0
1,164,665 - 13228 mRNA_4860 0.42 -0.6

Or see this region's nucleotide sequence