Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4932

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13299 and 13300 are separated by 499 nucleotides13300 and 13301 are separated by 338 nucleotides mRNA_4931: 13299 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,344,834 to 1,346,285 13299 mRNA_4932: 13300 - K11547 NDC80, HEC1, TID3 kinetochore protein NDC80, at 1,346,785 to 1,349,520 13300 mRNA_4933: 13301 - K14972 PAXIP1, PTIP PAX-interacting protein 1, at 1,349,859 to 1,354,237 13301

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,345,915 + 13299 mRNA_4931 0.74 +0.7
1,345,929 - 13299 mRNA_4931 0.75 +0.8
1,346,161 - +0.8
1,346,643 - +2.2
1,346,657 + -0.0
1,348,324 - 13300 mRNA_4932 0.56 -1.8
1,349,714 + +0.7
1,349,862 - -0.5
1,349,896 + +0.5
1,350,031 - -0.4
1,350,144 - +0.4
1,350,160 - -0.2
1,350,178 + -0.1
1,350,197 - +0.8
1,350,204 + -1.4
1,350,314 - 13301 mRNA_4933 0.10 +0.7
1,350,462 - 13301 mRNA_4933 0.14 +1.1
1,350,475 - 13301 mRNA_4933 0.14 +0.2

Or see this region's nucleotide sequence