Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4950

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13317 and 13318 are separated by 750 nucleotides13318 and 13319 are separated by 169 nucleotides mRNA_4949: 13317 - Hypothetical Protein, at 1,383,252 to 1,384,313 13317 mRNA_4950: 13318 - K02878 RP-L16, MRPL16, rplP large subunit ribosomal protein L16, at 1,385,064 to 1,386,007 13318 mRNA_4951: 13319 - K15114 ORT1 mitochondrial ornithine carrier protein, at 1,386,177 to 1,387,405 13319

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,384,138 - 13317 mRNA_4949 0.83 +1.6
1,384,269 + -0.3
1,384,272 + +0.3
1,384,403 - -1.5
1,384,415 - -0.6
1,384,417 + +0.4
1,384,420 + -1.2
1,384,444 - +0.4
1,384,445 + -0.6
1,384,455 + +1.6
1,384,456 + +0.7
1,384,463 + +0.1
1,384,494 + +1.4
1,384,515 + -0.4
1,384,518 - +0.3
1,384,541 - -0.4
1,384,593 + -0.5
1,384,595 - -0.3
1,384,599 - +0.5
1,384,599 - +0.9
1,384,606 + -0.5
1,384,608 - +0.4
1,384,622 - +0.9
1,384,631 - -0.0
1,384,632 + -0.2
1,384,644 + +0.4
1,384,650 + +1.7
1,384,666 - -1.0
1,384,711 - -0.1
1,384,758 + +0.1
1,384,784 + +0.1
1,384,791 + +2.4
1,384,826 - +0.7
1,384,889 - -0.2
1,384,918 - -0.3
1,385,045 - +0.1
1,386,061 - -1.3
1,386,076 - +0.3
1,386,077 + +0.7
1,386,086 - +0.1
1,386,092 + -0.6
1,386,095 - -0.1
1,386,109 + +0.7
1,386,109 + +0.3
1,386,445 + 13319 mRNA_4951 0.22 +0.6
1,386,523 - 13319 mRNA_4951 0.28 +2.3

Or see this region's nucleotide sequence