Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4963

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13330 and 13331 are separated by 626 nucleotides13331 and 13332 are separated by 931 nucleotides mRNA_4962: 13330 - Hypothetical Protein, at 1,416,081 to 1,416,742 13330 mRNA_4963: 13331 - Hypothetical Protein, at 1,417,369 to 1,418,489 13331 mRNA_4964: 13332 - K08334 BECN1, VPS30, ATG6 beclin 1, at 1,419,421 to 1,420,996 13332

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,416,394 + 13330 mRNA_4962 0.47 +0.6
1,416,409 + 13330 mRNA_4962 0.50 +2.0
1,416,539 + 13330 mRNA_4962 0.69 +0.4
1,416,627 - 13330 mRNA_4962 0.82 +0.2
1,416,686 + +1.2
1,416,788 + -0.0
1,416,897 + +2.5
1,416,900 - -0.2
1,416,951 + +0.9
1,417,063 - +0.3
1,417,213 + +2.1
1,417,266 - +1.7
1,417,529 - 13331 mRNA_4963 0.14 +0.6
1,417,539 + 13331 mRNA_4963 0.15 +0.4
1,417,654 - 13331 mRNA_4963 0.25 +0.0
1,417,811 + 13331 mRNA_4963 0.39 +0.5
1,417,823 - 13331 mRNA_4963 0.40 -0.0
1,417,852 + 13331 mRNA_4963 0.43 +1.1
1,417,920 + 13331 mRNA_4963 0.49 +0.9
1,417,974 + 13331 mRNA_4963 0.54 +2.7
1,418,236 - 13331 mRNA_4963 0.77 +0.6
1,418,327 + 13331 mRNA_4963 0.85 +1.1
1,418,356 + 13331 mRNA_4963 0.88 +1.8
1,418,432 + +0.4
1,418,577 + +0.4
1,418,693 + +2.9
1,418,713 - -1.5
1,418,953 - +0.4
1,419,035 + +1.0
1,419,190 + -1.3
1,419,264 - -0.4
1,419,293 + +0.0

Or see this region's nucleotide sequence