Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4977

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13345 and 13346 are separated by 883 nucleotides mRNA_4977: 13345 - Hypothetical Protein, at 1,459,156 to 1,464,394 13345 mRNA_4978: 13346 - K12883 NCBP2, CBP20 nuclear cap-binding protein subunit 2, at 1,465,278 to 1,466,176 13346

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,458,358 - -0.2
1,458,391 + -0.1
1,458,825 - -0.0
1,458,826 + -0.8
1,458,968 - +0.8
1,458,993 + -0.7
1,459,670 + -0.9
1,459,801 - 13345 mRNA_4977 0.12 +1.8
1,459,856 + 13345 mRNA_4977 0.13 +0.2
1,460,090 + 13345 mRNA_4977 0.18 -0.7
1,460,310 - 13345 mRNA_4977 0.22 +0.6
1,460,706 - 13345 mRNA_4977 0.30 -0.0
1,461,400 + 13345 mRNA_4977 0.43 +0.2
1,461,733 + 13345 mRNA_4977 0.49 +1.6
1,462,023 + 13345 mRNA_4977 0.55 +0.1
1,463,071 - 13345 mRNA_4977 0.75 +0.7
1,463,107 + 13345 mRNA_4977 0.75 +0.3
1,463,200 - 13345 mRNA_4977 0.77 -0.1
1,463,583 + 13345 mRNA_4977 0.85 -0.0
1,464,289 - +0.1
1,464,329 - +0.7
1,464,333 - +0.3
1,464,412 - +0.4
1,464,691 - +0.3
1,464,986 + +1.1
1,465,133 - -1.1
1,465,140 + +0.3
1,465,288 + -2.1
1,465,295 + +0.9
1,465,322 + +0.6

Or see this region's nucleotide sequence