Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5036

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13403 and 13404 are separated by 206 nucleotides13404 and 13405 are separated by 387 nucleotides mRNA_5035: 13403 - K11304 TIP60, KAT5, ESA1 histone acetyltransferase HTATIP, at 1,607,963 to 1,609,879 13403 mRNA_5036: 13404 - Hypothetical Protein, at 1,610,086 to 1,610,551 13404 mRNA_5037: 13405 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1,610,939 to 1,612,058 13405

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,610,184 - 13404 mRNA_5036 0.21 +2.2
1,610,205 + 13404 mRNA_5036 0.26 -0.4
1,610,209 + 13404 mRNA_5036 0.26 +0.1
1,610,230 + 13404 mRNA_5036 0.31 +1.7
1,610,298 - 13404 mRNA_5036 0.45 -0.2
1,610,351 + 13404 mRNA_5036 0.57 +0.3
1,610,355 + 13404 mRNA_5036 0.58 +1.3
1,610,465 - 13404 mRNA_5036 0.81 +0.0
1,610,608 - +0.1
1,610,611 + +0.1
1,610,616 - +0.3
1,610,625 - -0.2
1,610,633 - -0.8
1,610,670 - +0.3
1,610,747 - -0.0
1,610,769 - +0.9
1,610,817 + +0.7
1,610,826 + -1.5
1,610,957 + -0.8
1,610,982 - +0.3
1,611,062 + 13405 mRNA_5037 0.11 -0.2
1,611,363 - 13405 mRNA_5037 0.38 -0.0
1,611,364 + 13405 mRNA_5037 0.38 +0.5

Or see this region's nucleotide sequence