Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5091

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13458 and 13459 are separated by 388 nucleotides13459 and 13460 are separated by 282 nucleotides mRNA_5090: 13458 - K08900 BCS1 mitochondrial chaperone BCS1, at 1,726,139 to 1,727,985 13458 mRNA_5091: 13459 - Hypothetical Protein, at 1,728,374 to 1,730,110 13459 mRNA_5092: 13460 - HMMPfam-RTA1 like protein-PF04479, at 1,730,393 to 1,731,831 13460

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,727,590 - 13458 mRNA_5090 0.79 -1.0
1,728,016 + +0.3
1,728,041 + -1.4
1,728,174 - +0.8
1,728,321 + +0.1
1,728,329 + -0.1
1,728,780 + 13459 mRNA_5091 0.23 +1.3
1,729,052 + 13459 mRNA_5091 0.39 +0.9
1,730,101 + +0.7
1,730,215 - +0.1
1,730,385 - +0.6
1,730,551 + 13460 mRNA_5092 0.11 +0.1
1,730,950 - 13460 mRNA_5092 0.39 +0.1
1,731,076 - 13460 mRNA_5092 0.47 +1.2
1,731,109 + 13460 mRNA_5092 0.50 +1.3

Or see this region's nucleotide sequence