Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5098

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13465 and 13466 are separated by 882 nucleotides13466 and 13467 are separated by 847 nucleotides mRNA_5097: 13465 - Hypothetical Protein, at 1,745,073 to 1,746,754 13465 mRNA_5098: 13466 - K08065 NFYB nuclear transcription Y subunit beta, at 1,747,637 to 1,748,369 13466 mRNA_5099: 13467 - Hypothetical Protein, at 1,749,217 to 1,750,028 13467

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,746,987 - -1.2
1,746,989 - +0.1
1,746,996 + -2.5
1,747,019 + +3.3
1,747,023 + -0.1
1,747,079 - -0.3
1,747,109 + -0.4
1,747,137 - -0.1
1,747,137 - +1.2
1,747,139 + +0.2
1,747,144 + +0.7
1,747,150 - +1.5
1,747,162 - -0.2
1,747,163 - +0.3
1,747,165 + -0.2
1,747,166 - -0.0
1,747,168 + -1.0
1,747,180 + +3.7
1,747,181 + +2.0
1,747,192 - +0.3
1,747,221 - +0.4
1,747,221 + +1.1
1,747,237 + -0.1
1,747,286 - +1.2
1,747,307 + -0.4
1,747,308 - -0.5
1,747,309 + -0.2
1,747,317 + -0.8
1,747,318 + -0.4
1,747,327 - -0.3
1,747,327 - -0.6
1,747,333 - +0.9
1,747,476 - +0.4
1,747,865 + 13466 mRNA_5098 0.31 +0.6
1,747,926 + 13466 mRNA_5098 0.39 +0.0
1,748,335 - +0.6
1,748,345 - +0.4
1,748,346 + -0.4
1,748,372 - +1.0
1,748,375 + +0.1
1,748,463 - +1.1
1,748,479 - -0.0
1,748,480 - -0.9
1,748,480 + -0.1
1,748,489 + -0.4
1,748,489 + +0.0
1,748,522 - +1.3
1,748,575 - -0.2
1,748,639 - -0.8
1,748,644 + +1.1
1,748,668 + +0.7
1,748,676 - -1.9
1,748,681 - +0.7
1,748,686 + +0.1
1,748,686 + +0.1
1,748,687 - -0.3
1,748,688 - +0.4
1,748,693 - +0.2
1,748,694 - +1.2
1,748,700 - +3.0
1,748,701 + -0.6
1,748,706 + -0.7
1,748,744 + -0.8
1,748,744 + +0.1
1,748,760 + +0.5
1,748,786 + -2.6
1,748,788 + +0.2
1,748,791 + +1.2
1,748,792 - -0.0
1,748,806 - +1.3
1,748,823 + +1.8
1,748,827 - +0.2
1,748,830 - +0.9
1,748,837 + +0.4
1,748,846 + +0.1
1,748,854 + +0.2
1,748,855 + -0.3
1,748,858 - -0.1
1,748,861 - +0.2
1,748,862 - +0.5
1,748,863 + +2.0
1,748,863 - -1.3
1,748,893 - -0.6
1,748,922 - -0.7
1,748,929 - +0.3
1,748,991 - -0.4
1,749,000 - -0.3
1,749,001 + +0.2
1,749,028 + +0.1
1,749,051 + +0.5
1,749,095 - +0.9
1,749,098 + +0.5
1,749,115 + +0.5
1,749,124 - +0.2
1,749,124 - +0.4
1,749,145 - -1.4
1,749,146 + +1.4
1,749,271 + -2.9

Or see this region's nucleotide sequence