Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5167

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13534 and 13535 are separated by 561 nucleotides mRNA_5166: 13534 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 53,307 to 58,220 13534 mRNA_5167: 13535 - Hypothetical Protein, at 58,782 to 59,470 13535

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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57,858 - +0.8
57,867 + +0.4
57,896 + -0.1
58,295 - +0.5
58,464 + +0.4
58,586 - -0.6
58,589 - +1.5
58,613 - -0.5
58,633 - -1.1
58,734 + -0.6
59,032 - 13535 mRNA_5167 0.36 +1.4
59,174 + 13535 mRNA_5167 0.57 +1.6
59,187 + 13535 mRNA_5167 0.59 +1.9
59,189 + 13535 mRNA_5167 0.59 -1.0
59,350 + 13535 mRNA_5167 0.82 +2.5
59,461 + +2.2
59,493 - -0.2
59,495 - +0.0
59,647 - +0.2
59,656 - +0.8
59,658 - +0.5
59,687 - +0.5
59,691 - +0.2
59,723 - -0.8
59,794 - +0.3
59,803 - +0.3
59,955 - +0.9
60,199 - +1.5
60,240 + +0.4
60,250 - -0.8
60,289 + +0.4

Or see this region's nucleotide sequence