Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5193

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13560 and 13561 are separated by 458 nucleotides13561 and 13562 are separated by 891 nucleotides mRNA_5192: 13560 - KOG2814 Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family), at 117,744 to 118,664 13560 mRNA_5193: 13561 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 119,123 to 121,882 13561 mRNA_5194: 13562 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 122,774 to 124,635 13562

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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118,165 + 13560 mRNA_5192 0.46 -0.1
118,169 + 13560 mRNA_5192 0.46 +0.1
118,730 + -0.1
118,734 - -0.2
120,480 - 13561 mRNA_5193 0.49 +0.9
120,621 + 13561 mRNA_5193 0.54 +0.6
120,630 - 13561 mRNA_5193 0.55 +0.0
120,654 + 13561 mRNA_5193 0.55 +0.8
121,090 - 13561 mRNA_5193 0.71 +0.5
121,230 - 13561 mRNA_5193 0.76 +1.4
121,564 - 13561 mRNA_5193 0.88 -0.4
121,667 + +0.6
121,975 - +0.6
121,978 + +0.2
121,994 - -0.1
122,124 - +0.9
122,163 + -1.3
122,163 + -0.2
122,179 + -0.1
122,191 + +0.7
122,192 + +0.6
122,269 - -0.0
122,274 - +1.4
122,274 - +0.3
122,280 - +0.4
122,280 + +0.5
122,404 - +0.9
122,445 - +0.3
122,468 + +1.1
122,469 - +0.9
122,473 + +0.5
122,474 + +0.1
122,518 - +1.0
122,519 + +1.3
122,546 - +0.4
122,566 - +0.2
122,570 + -0.5
122,572 + +0.2
122,592 - +0.1
122,595 + +0.9
122,601 + +1.0
122,608 - -0.5
122,625 + +0.1
122,757 + -3.8

Or see this region's nucleotide sequence