Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5251

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13618 and 13619 are separated by 197 nucleotides13619 and 13620 are separated by 685 nucleotides mRNA_5250: 13618 - SUPERFAMILY--SSF101898, at 267,361 to 271,776 13618 mRNA_5251: 13619 - K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1, at 271,974 to 275,743 13619 mRNA_5252: 13620 - BLAST LPS-assembly protein LptD [Rhizoctonia solani], at 276,429 to 278,610 13620

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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270,977 + 13618 mRNA_5250 0.82 +2.3
270,984 + 13618 mRNA_5250 0.82 +1.0
270,984 - 13618 mRNA_5250 0.82 +0.4
271,053 - 13618 mRNA_5250 0.84 +0.1
271,068 + 13618 mRNA_5250 0.84 +2.2
271,239 - 13618 mRNA_5250 0.88 -0.0
271,263 - 13618 mRNA_5250 0.88 +1.6
271,270 - 13618 mRNA_5250 0.89 +0.8
271,284 - 13618 mRNA_5250 0.89 -0.2
271,286 + 13618 mRNA_5250 0.89 +0.8
271,569 - +0.5
271,840 - +0.7
271,842 - -0.3
272,162 - +1.6
272,168 + -1.6
272,667 + 13619 mRNA_5251 0.18 -0.2
275,126 + 13619 mRNA_5251 0.84 -2.7
275,483 - +0.7
275,769 + +2.0
275,775 + -0.1
275,785 + +1.2
275,871 - +0.4
275,949 + -0.9
276,023 + +1.8
276,058 + +0.3
276,115 - +0.6
276,130 - -0.9
276,141 - +1.0
276,152 + +0.4
276,154 - +0.1
276,162 - +0.0
276,176 + +0.9
276,182 + +0.9
276,186 - -0.2
276,187 + +0.5
276,189 + -0.4
276,193 + +0.1
276,205 - -0.1
276,207 - -0.8
276,212 - +0.8
276,225 - +0.1
276,228 + +0.6
276,230 + -1.3
276,338 + +0.5
276,340 - +0.3
276,357 + +0.5
276,381 + +0.8
276,384 + +1.8
276,388 + +0.1
276,507 + +0.0
276,519 - -2.2
276,661 - 13620 mRNA_5252 0.11 -1.2

Or see this region's nucleotide sequence