Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5270

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13638 and 13639 are separated by 534 nucleotides mRNA_5270: 13638 - Hypothetical Protein, at 326,289 to 326,690 13638 mRNA_5271: 13639 - K11841 USP10, UBP3 ubiquitin carboxyl-terminal hydrolase 10, at 327,225 to 330,329 13639

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
325,359 + +2.2
325,477 - +1.3
325,479 - +1.0
325,490 - +1.5
325,506 + -0.7
325,543 + +0.6
325,768 + +0.1
326,340 + 13638 mRNA_5270 0.13 +0.9
326,342 - 13638 mRNA_5270 0.13 +0.5
326,345 - 13638 mRNA_5270 0.14 +2.9
326,481 + 13638 mRNA_5270 0.48 +0.1
326,644 + 13638 mRNA_5270 0.88 -0.7
326,646 - 13638 mRNA_5270 0.89 -0.3
326,656 - +0.3
326,657 + +0.6
326,660 + -0.6
326,688 - -0.2
326,694 + -0.9
326,708 + -0.7
326,713 - +0.9
326,724 + +0.0
326,732 - +0.3
326,803 + -1.0
326,806 + -0.4
326,838 + -0.2
326,878 + -0.4
326,884 + -0.5
326,885 + +0.1
327,010 - +1.5
327,011 - +1.7
327,065 + +0.7
327,111 - -0.8
327,420 - -1.0
327,443 + -0.2

Or see this region's nucleotide sequence