Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5293

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13660 and 13661 are separated by 493 nucleotides13661 and 13662 are separated by 376 nucleotides mRNA_5292: 13660 - Hypothetical Protein, at 372,061 to 373,005 13660 mRNA_5293: 13661 - Hypothetical Protein, at 373,499 to 378,247 13661 mRNA_5294: 13662 - K02830 HRAD1, RAD17 cell cycle checkpoint protein, at 378,624 to 380,568 13662

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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372,585 - 13660 mRNA_5292 0.55 +1.1
372,589 + 13660 mRNA_5292 0.56 +0.2
372,692 + 13660 mRNA_5292 0.67 +0.7
372,701 - 13660 mRNA_5292 0.68 +0.9
372,717 - 13660 mRNA_5292 0.69 +1.0
372,721 + 13660 mRNA_5292 0.70 -0.9
372,730 - 13660 mRNA_5292 0.71 +2.6
372,730 + 13660 mRNA_5292 0.71 +0.6
372,745 - 13660 mRNA_5292 0.72 +2.7
372,840 + 13660 mRNA_5292 0.82 -0.5
372,843 - 13660 mRNA_5292 0.83 +0.2
372,850 + 13660 mRNA_5292 0.83 -0.0
372,860 + 13660 mRNA_5292 0.85 +0.2
372,876 + 13660 mRNA_5292 0.86 +0.4
372,933 + +0.2
372,988 - +1.7
373,016 - +0.8
373,018 - +1.4
373,023 + +0.2
373,031 + +0.8
373,037 - +0.6
373,040 + -1.4
373,053 + +0.5
373,076 + +0.4
373,108 + -0.4
373,164 - -0.6
373,170 + +0.2
373,191 - +0.7
373,192 + +0.6
373,202 + +1.2
373,213 + +1.9
373,213 + -1.5
373,220 - +0.9
373,222 + -0.0
373,347 + -0.3
373,350 + -0.6
373,368 + -1.6
373,623 - +0.3
373,743 + +2.0
373,827 + -0.4
374,059 - 13661 mRNA_5293 0.12 +0.6
374,122 - 13661 mRNA_5293 0.13 -2.4
374,345 + 13661 mRNA_5293 0.18 +1.3
374,545 - 13661 mRNA_5293 0.22 +0.4
374,802 - 13661 mRNA_5293 0.27 -0.6
375,344 - 13661 mRNA_5293 0.39 +0.3
375,544 + 13661 mRNA_5293 0.43 +0.2
375,546 - 13661 mRNA_5293 0.43 +0.6
375,575 - 13661 mRNA_5293 0.44 -0.9
375,599 - 13661 mRNA_5293 0.44 -1.3
375,705 + 13661 mRNA_5293 0.46 +0.5
375,737 + 13661 mRNA_5293 0.47 +0.3
376,029 + 13661 mRNA_5293 0.53 -1.9
376,642 + 13661 mRNA_5293 0.66 +0.8
376,837 - 13661 mRNA_5293 0.70 +0.4
376,882 + 13661 mRNA_5293 0.71 -0.2
376,884 + 13661 mRNA_5293 0.71 +1.3
376,892 - 13661 mRNA_5293 0.71 -0.2
376,975 + 13661 mRNA_5293 0.73 +0.3
377,627 - 13661 mRNA_5293 0.87 -0.2
377,705 + 13661 mRNA_5293 0.89 +0.9
378,003 - -1.3
378,022 - +1.1
378,061 + -0.4
378,130 + +0.6
378,151 + -0.1
378,307 - +0.3
378,334 + +1.8
378,459 + +0.3
378,509 - -0.7
378,704 - +1.3
378,738 - +0.6
379,036 - 13662 mRNA_5294 0.21 -1.3
379,054 - 13662 mRNA_5294 0.22 -0.8
379,059 + 13662 mRNA_5294 0.22 -1.6
379,162 + 13662 mRNA_5294 0.28 -1.6
379,179 + 13662 mRNA_5294 0.29 -0.2

Or see this region's nucleotide sequence