Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5295

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13662 and 13663 are separated by 504 nucleotides13663 and 13664 are separated by 484 nucleotides mRNA_5294: 13662 - K02830 HRAD1, RAD17 cell cycle checkpoint protein, at 378,624 to 380,568 13662 mRNA_5295: 13663 - Hypothetical Protein, at 381,073 to 381,951 13663 mRNA_5296: 13664 - Hypothetical Protein, at 382,436 to 382,844 13664

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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380,611 - +0.1
380,644 - +0.5
380,665 + +1.1
380,668 + +2.3
380,782 - -0.0
380,929 - +0.2
380,939 - -0.4
380,949 + +0.5
380,996 - +1.4
381,182 - 13663 mRNA_5295 0.12 +0.8
381,627 + 13663 mRNA_5295 0.63 -0.6
381,637 + 13663 mRNA_5295 0.64 -1.4
381,659 + 13663 mRNA_5295 0.67 -1.0
381,661 - 13663 mRNA_5295 0.67 +0.0
381,781 + 13663 mRNA_5295 0.81 +0.7
381,782 - 13663 mRNA_5295 0.81 +0.2
381,796 - 13663 mRNA_5295 0.82 -0.5
381,809 + 13663 mRNA_5295 0.84 -0.9
381,812 - 13663 mRNA_5295 0.84 +0.2
381,813 - 13663 mRNA_5295 0.84 -0.3
381,820 - 13663 mRNA_5295 0.85 -0.9
381,880 - +0.5
381,933 - -0.7
381,944 - +0.2
381,955 - -0.1
381,956 + +0.0
381,967 - +0.9
382,042 - -0.1
382,093 + +0.3
382,097 + -0.2
382,103 + -0.2
382,106 + +0.9
382,114 + +1.4
382,205 - -0.3
382,232 + +1.7
382,255 - +0.3
382,276 - -0.2
382,281 + -0.4
382,353 - +1.8
382,354 + -0.5
382,379 + -0.8
382,386 + -0.4
382,561 + 13664 mRNA_5296 0.31 +1.4
382,614 + 13664 mRNA_5296 0.44 +0.4
382,638 - 13664 mRNA_5296 0.49 +1.8
382,656 + 13664 mRNA_5296 0.54 +0.2
382,747 + 13664 mRNA_5296 0.76 -0.1
382,809 - +0.6
382,812 - +0.6
382,813 + -0.8
382,814 - -0.3
382,823 - +1.1
382,823 - +1.4
382,824 - +1.2
382,848 - +0.3
382,864 - +1.6
382,869 + -0.1
382,874 - +0.2
382,879 + -0.5
382,882 - -0.3
382,883 + -0.0
382,885 - -0.1
382,907 - -1.7
382,911 + +0.4
382,912 - -0.1
382,921 + +1.2

Or see this region's nucleotide sequence