Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5338

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13705 and 13706 are separated by 483 nucleotides13706 and 13707 are separated by 153 nucleotides mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484,904 to 487,998 13705 mRNA_5338: 13706 - K00891 E2.7.1.71, aroK, aroL shikimate kinase, at 488,482 to 491,424 13706 mRNA_5339: 13707 - KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis, at 491,578 to 492,823 13707

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
487,523 - 13705 mRNA_5337 0.85 +0.8
488,100 - +1.4
488,146 + +0.7
488,373 - +1.2
488,393 + +1.2
488,408 + -0.1
488,410 - +0.2
488,520 - +0.4
488,545 - -0.4
488,803 + 13706 mRNA_5338 0.11 +0.5
488,810 - 13706 mRNA_5338 0.11 +0.2
488,810 - 13706 mRNA_5338 0.11 -1.5
488,822 - 13706 mRNA_5338 0.12 +2.5
488,956 - 13706 mRNA_5338 0.16 -0.3
488,991 - 13706 mRNA_5338 0.17 +0.2
488,996 + 13706 mRNA_5338 0.17 -1.2
489,100 + 13706 mRNA_5338 0.21 -0.5
489,545 - 13706 mRNA_5338 0.36 +0.2
489,925 - 13706 mRNA_5338 0.49 +0.2
489,968 - 13706 mRNA_5338 0.50 +1.3
490,131 + 13706 mRNA_5338 0.56 +0.2
490,241 + 13706 mRNA_5338 0.60 -0.6
490,297 + 13706 mRNA_5338 0.62 +1.3
490,508 + 13706 mRNA_5338 0.69 -0.0
490,508 - 13706 mRNA_5338 0.69 -0.1
490,524 + 13706 mRNA_5338 0.69 +0.7
490,564 - 13706 mRNA_5338 0.71 -0.2
490,576 - 13706 mRNA_5338 0.71 +1.1
490,740 - 13706 mRNA_5338 0.77 -1.1
490,925 + 13706 mRNA_5338 0.83 -0.2

Or see this region's nucleotide sequence