Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5345

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13712 and 13713 are separated by 223 nucleotides13713 and 13714 are separated by 233 nucleotides mRNA_5344: 13712 - KOG4176 Uncharacterized conserved protein, at 502,069 to 503,147 13712 mRNA_5345: 13713 - Hypothetical Protein, at 503,371 to 504,560 13713 mRNA_5346: 13714 - HMMPfam-Hamartin protein-PF04388, at 504,794 to 508,994 13714

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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502,448 + 13712 mRNA_5344 0.35 +0.3
502,773 - 13712 mRNA_5344 0.65 +2.1
502,888 - 13712 mRNA_5344 0.76 -0.2
503,028 - 13712 mRNA_5344 0.89 +0.6
503,055 + +0.5
503,056 - -0.2
503,162 - +1.4
503,182 - +0.9
503,199 + +1.1
504,687 + +1.0
504,814 + -0.3
504,990 - -1.1
504,998 + -1.3
505,227 + 13714 mRNA_5346 0.10 +0.9
505,279 - 13714 mRNA_5346 0.12 -0.1
505,302 + 13714 mRNA_5346 0.12 -0.2
505,365 + 13714 mRNA_5346 0.14 +1.5
505,410 - 13714 mRNA_5346 0.15 -0.1
505,416 - 13714 mRNA_5346 0.15 -0.0
505,422 - 13714 mRNA_5346 0.15 +1.0
505,429 + 13714 mRNA_5346 0.15 -0.1
505,439 - 13714 mRNA_5346 0.15 -0.4
505,445 - 13714 mRNA_5346 0.15 -0.0
505,452 - 13714 mRNA_5346 0.16 +1.0
505,455 + 13714 mRNA_5346 0.16 +2.7
505,469 + 13714 mRNA_5346 0.16 -1.2
505,472 - 13714 mRNA_5346 0.16 -0.2
505,474 - 13714 mRNA_5346 0.16 +2.5
505,484 + 13714 mRNA_5346 0.16 +1.2
505,488 + 13714 mRNA_5346 0.17 +1.7
505,489 - 13714 mRNA_5346 0.17 +1.0
505,490 + 13714 mRNA_5346 0.17 +0.8
505,491 - 13714 mRNA_5346 0.17 +1.2
505,492 - 13714 mRNA_5346 0.17 -0.9
505,494 + 13714 mRNA_5346 0.17 -1.1
505,495 + 13714 mRNA_5346 0.17 +0.8
505,497 + 13714 mRNA_5346 0.17 -0.8
505,498 + 13714 mRNA_5346 0.17 +0.3
505,499 - 13714 mRNA_5346 0.17 +0.8
505,501 - 13714 mRNA_5346 0.17 +0.5
505,504 - 13714 mRNA_5346 0.17 -0.7
505,541 + 13714 mRNA_5346 0.18 +3.1
505,544 + 13714 mRNA_5346 0.18 -0.3
505,546 + 13714 mRNA_5346 0.18 -0.3
505,547 - 13714 mRNA_5346 0.18 +0.7
505,551 + 13714 mRNA_5346 0.18 +0.1
505,551 - 13714 mRNA_5346 0.18 -0.3
505,553 - 13714 mRNA_5346 0.18 +1.2
505,554 - 13714 mRNA_5346 0.18 +0.3
505,558 + 13714 mRNA_5346 0.18 -1.5
505,559 - 13714 mRNA_5346 0.18 +0.1
505,560 + 13714 mRNA_5346 0.18 +2.6

Or see this region's nucleotide sequence