Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13762 and 13763 are separated by 73 nucleotides mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1,074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997 13763

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
1 + -1.3
1 + +0.0
1 + +1.8
1 + -1.5
23 + -1.3
29 + +0.7
29 + +1.8
34 + -2.8
39 + +0.1
39 + -0.6
47 + +1.3
50 + -2.0
50 + +0.4
50 + -0.6
50 + +1.0
50 - -0.3
51 + +1.7
61 + +2.8
62 + -0.0
96 + +1.9
116 + +0.9
158 - +0.2
159 - -0.1
160 - +1.1
169 - +0.1
180 - +1.5
189 + -0.0
198 + -0.1
201 - +0.9
208 - -0.1
210 + +1.0
225 + 13762 mRNA_5394 0.11 -1.2
225 + 13762 mRNA_5394 0.11 +0.4
244 + 13762 mRNA_5394 0.13 -3.3
245 - 13762 mRNA_5394 0.13 +0.6
271 - 13762 mRNA_5394 0.16 -0.2
276 - 13762 mRNA_5394 0.16 -1.7
277 + 13762 mRNA_5394 0.16 -1.1
280 - 13762 mRNA_5394 0.17 +0.8
306 + 13762 mRNA_5394 0.19 -0.2
317 - 13762 mRNA_5394 0.21 +0.4
345 + 13762 mRNA_5394 0.23 +0.0
345 - 13762 mRNA_5394 0.23 -3.2
347 + 13762 mRNA_5394 0.24 +0.5
359 - 13762 mRNA_5394 0.25 -3.1
387 - 13762 mRNA_5394 0.28 +1.1
399 + 13762 mRNA_5394 0.29 +1.1
434 + 13762 mRNA_5394 0.33 -0.0
447 - 13762 mRNA_5394 0.34 +1.5
485 - 13762 mRNA_5394 0.38 -0.2
543 + 13762 mRNA_5394 0.44 +0.0
649 + 13762 mRNA_5394 0.55 +0.9
667 + 13762 mRNA_5394 0.57 -0.8
667 - 13762 mRNA_5394 0.57 +2.2
678 - 13762 mRNA_5394 0.58 -0.6
718 + 13762 mRNA_5394 0.63 +0.8
723 + 13762 mRNA_5394 0.63 -0.8
802 + 13762 mRNA_5394 0.71 -0.5
806 + 13762 mRNA_5394 0.72 +1.1
905 - 13762 mRNA_5394 0.82 +0.3
911 + 13762 mRNA_5394 0.83 +1.5
965 + 13762 mRNA_5394 0.88 -0.3
966 + 13762 mRNA_5394 0.89 +0.8
968 + 13762 mRNA_5394 0.89 -0.1
1,014 - +1.3
1,084 - -1.5
1,103 - +0.2
1,110 + +0.5
1,245 - 13763 mRNA_5395 0.11 -2.9
1,260 - 13763 mRNA_5395 0.13 -0.4
1,376 - 13763 mRNA_5395 0.27 -0.3
1,438 + 13763 mRNA_5395 0.34 -0.2
1,438 + 13763 mRNA_5395 0.34 +1.5
1,438 + 13763 mRNA_5395 0.34 +0.2
1,523 + 13763 mRNA_5395 0.44 +0.9
1,528 - 13763 mRNA_5395 0.45 +0.6
1,533 + 13763 mRNA_5395 0.45 +1.0
1,538 + 13763 mRNA_5395 0.46 -3.9
1,538 - 13763 mRNA_5395 0.46 -0.7
1,556 + 13763 mRNA_5395 0.48 +0.1
1,639 + 13763 mRNA_5395 0.58 +0.7
1,854 - 13763 mRNA_5395 0.83 +1.8
1,855 - 13763 mRNA_5395 0.83 +1.0
1,887 - 13763 mRNA_5395 0.87 -0.1
1,908 - 13763 mRNA_5395 0.89 -2.4
2,000 - -0.7
2,009 + +0.5

Or see this region's nucleotide sequence