Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5395

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13762 and 13763 are separated by 73 nucleotides13763 and 13764 are separated by 94 nucleotides mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1,074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997 13763 mRNA_5396: 13764 - KOG4567 GTPase-activating protein, at 2,092 to 5,786 13764

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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158 - +0.2
159 - -0.1
160 - +1.1
169 - +0.1
180 - +1.5
189 + -0.0
198 + -0.1
201 - +0.9
208 - -0.1
210 + +1.0
225 + 13762 mRNA_5394 0.11 -1.2
225 + 13762 mRNA_5394 0.11 +0.4
244 + 13762 mRNA_5394 0.13 -3.3
245 - 13762 mRNA_5394 0.13 +0.6
271 - 13762 mRNA_5394 0.16 -0.2
276 - 13762 mRNA_5394 0.16 -1.7
277 + 13762 mRNA_5394 0.16 -1.1
280 - 13762 mRNA_5394 0.17 +0.8
306 + 13762 mRNA_5394 0.19 -0.2
317 - 13762 mRNA_5394 0.21 +0.4
345 + 13762 mRNA_5394 0.23 +0.0
345 - 13762 mRNA_5394 0.23 -3.2
347 + 13762 mRNA_5394 0.24 +0.5
359 - 13762 mRNA_5394 0.25 -3.1
387 - 13762 mRNA_5394 0.28 +1.1
399 + 13762 mRNA_5394 0.29 +1.1
434 + 13762 mRNA_5394 0.33 -0.0
447 - 13762 mRNA_5394 0.34 +1.5
485 - 13762 mRNA_5394 0.38 -0.2
543 + 13762 mRNA_5394 0.44 +0.0
649 + 13762 mRNA_5394 0.55 +0.9
667 + 13762 mRNA_5394 0.57 -0.8
667 - 13762 mRNA_5394 0.57 +2.2
678 - 13762 mRNA_5394 0.58 -0.6
718 + 13762 mRNA_5394 0.63 +0.8
723 + 13762 mRNA_5394 0.63 -0.8
802 + 13762 mRNA_5394 0.71 -0.5
806 + 13762 mRNA_5394 0.72 +1.1
905 - 13762 mRNA_5394 0.82 +0.3
911 + 13762 mRNA_5394 0.83 +1.5
965 + 13762 mRNA_5394 0.88 -0.3
966 + 13762 mRNA_5394 0.89 +0.8
968 + 13762 mRNA_5394 0.89 -0.1
1,014 - +1.3
1,084 - -1.5
1,103 - +0.2
1,110 + +0.5
1,245 - 13763 mRNA_5395 0.11 -2.9
1,260 - 13763 mRNA_5395 0.13 -0.4
1,376 - 13763 mRNA_5395 0.27 -0.3
1,438 + 13763 mRNA_5395 0.34 -0.2
1,438 + 13763 mRNA_5395 0.34 +1.5
1,438 + 13763 mRNA_5395 0.34 +0.2
1,523 + 13763 mRNA_5395 0.44 +0.9
1,528 - 13763 mRNA_5395 0.45 +0.6
1,533 + 13763 mRNA_5395 0.45 +1.0
1,538 + 13763 mRNA_5395 0.46 -3.9
1,538 - 13763 mRNA_5395 0.46 -0.7
1,556 + 13763 mRNA_5395 0.48 +0.1
1,639 + 13763 mRNA_5395 0.58 +0.7
1,854 - 13763 mRNA_5395 0.83 +1.8
1,855 - 13763 mRNA_5395 0.83 +1.0
1,887 - 13763 mRNA_5395 0.87 -0.1
1,908 - 13763 mRNA_5395 0.89 -2.4
2,000 - -0.7
2,009 + +0.5
2,093 + -0.3
2,125 - -0.5
2,156 - +0.4
2,162 + -0.9
2,397 + -0.7
2,412 + -0.2
2,570 + 13764 mRNA_5396 0.13 +0.5
2,586 + 13764 mRNA_5396 0.13 +1.8
2,594 - 13764 mRNA_5396 0.14 +2.7
2,597 + 13764 mRNA_5396 0.14 +0.8
2,661 + 13764 mRNA_5396 0.15 -0.6
2,773 + 13764 mRNA_5396 0.18 +0.4
2,847 - 13764 mRNA_5396 0.20 +0.6
2,895 - 13764 mRNA_5396 0.22 +0.7
2,923 + 13764 mRNA_5396 0.22 -0.1

Or see this region's nucleotide sequence