Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5409

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13777 and 13778 are separated by 993 nucleotides mRNA_5409: 13777 - Hypothetical Protein, at 32,747 to 36,067 13777 mRNA_5410: 13778 - KOG2952 Cell cycle control protein, at 37,061 to 38,634 13778

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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31,749 + +0.4
31,751 - +0.7
31,845 + -1.5
31,873 - +0.4
31,884 + +0.6
31,945 - -1.2
32,038 + +1.1
32,043 + +0.6
32,224 + +0.3
32,334 + +0.8
32,346 - +0.2
32,369 + +0.2
32,369 + +1.2
32,499 - +0.5
32,612 - +2.0
32,618 + +0.3
32,633 + +0.0
32,759 - +0.4
32,766 + -0.3
32,768 + +0.5
32,883 + -0.3
32,926 + -0.4
33,060 - +0.0
33,073 - +0.4
33,382 + 13777 mRNA_5409 0.19 +0.5
33,769 + 13777 mRNA_5409 0.31 -1.5
33,916 - 13777 mRNA_5409 0.35 +0.6
33,929 - 13777 mRNA_5409 0.36 +1.2
33,951 - 13777 mRNA_5409 0.36 -0.2
33,954 - 13777 mRNA_5409 0.36 -1.4
34,061 - 13777 mRNA_5409 0.40 +0.5
34,202 - 13777 mRNA_5409 0.44 +0.6
34,202 - 13777 mRNA_5409 0.44 -0.2
34,247 + 13777 mRNA_5409 0.45 -0.4
34,459 - 13777 mRNA_5409 0.52 +0.8
34,472 - 13777 mRNA_5409 0.52 -0.5
34,935 + 13777 mRNA_5409 0.66 -0.4
35,096 - 13777 mRNA_5409 0.71 +0.4
35,256 + 13777 mRNA_5409 0.76 -0.9
35,710 - 13777 mRNA_5409 0.89 -0.2
35,712 + 13777 mRNA_5409 0.89 -0.6
35,805 + +0.3
35,819 - -0.3
35,967 - -1.6
35,967 - +2.1
35,973 - +0.4
35,973 - +0.8
35,979 - +0.5
35,986 + -1.1
35,989 + +1.7
36,104 - +0.6
36,105 + +0.8
36,114 + -0.4
36,116 - -0.1
36,123 + -0.1
36,123 - -0.0
36,127 - -0.8
36,134 + +0.7
36,139 - +0.3
36,146 + +0.1
36,253 - +1.6
36,270 + -0.7
36,410 - +1.6
36,415 + +1.0
36,461 - -0.4
36,529 - +1.1
36,550 - +0.6
36,742 - +0.5
36,863 - +1.3
36,890 + +0.1
37,014 - +0.4
37,018 + -1.9
37,025 - +1.9
37,028 + +1.3
37,028 - -1.8
37,029 + +1.4
37,043 + +1.7

Or see this region's nucleotide sequence