Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5410

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13777 and 13778 are separated by 993 nucleotides13778 and 13779 are separated by 545 nucleotides mRNA_5409: 13777 - Hypothetical Protein, at 32,747 to 36,067 13777 mRNA_5410: 13778 - KOG2952 Cell cycle control protein, at 37,061 to 38,634 13778 mRNA_5411: 13779 - K03251 EIF3D translation initiation factor 3 subunit D, at 39,180 to 41,133 13779

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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36,104 - +0.6
36,105 + +0.8
36,114 + -0.4
36,116 - -0.1
36,123 + -0.1
36,123 - -0.0
36,127 - -0.8
36,134 + +0.7
36,139 - +0.3
36,146 + +0.1
36,253 - +1.6
36,270 + -0.7
36,410 - +1.6
36,415 + +1.0
36,461 - -0.4
36,529 - +1.1
36,550 - +0.6
36,742 - +0.5
36,863 - +1.3
36,890 + +0.1
37,014 - +0.4
37,018 + -1.9
37,025 - +1.9
37,028 + +1.3
37,028 - -1.8
37,029 + +1.4
37,043 + +1.7
37,461 - 13778 mRNA_5410 0.25 -0.1
37,465 + 13778 mRNA_5410 0.26 -0.9
38,600 + -0.1
38,780 - +0.3
38,781 - -1.2
38,790 + +0.4
38,923 + +0.2
38,935 - -0.3
38,941 - +0.5
38,973 + -0.3
39,074 - +0.1
39,086 - -0.1
39,111 + +1.2

Or see this region's nucleotide sequence