Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5416

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13784 and 13785 are separated by 145 nucleotides mRNA_5416: 13784 - K04496 CTBP C-terminal binding protein, at 52,502 to 53,852 13784 mRNA_5417: 13785 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 53,998 to 56,725 13785

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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52,065 + -0.5
52,183 - +0.1
52,213 - +0.7
52,245 - +0.9
52,363 + +0.0
52,366 + +0.1
52,387 + +0.4
52,493 + -0.6
52,812 - 13784 mRNA_5416 0.23 +0.7
53,002 + 13784 mRNA_5416 0.37 +0.6
53,163 + 13784 mRNA_5416 0.49 +0.0
53,273 + 13784 mRNA_5416 0.57 -0.9
53,347 - 13784 mRNA_5416 0.63 +1.3
53,383 - 13784 mRNA_5416 0.65 +0.1
53,512 - 13784 mRNA_5416 0.75 +1.3
53,551 + 13784 mRNA_5416 0.78 +1.2
53,605 - 13784 mRNA_5416 0.82 -0.4
53,733 - +0.2
54,389 - 13785 mRNA_5417 0.14 +1.0
54,442 - 13785 mRNA_5417 0.16 +0.7
54,545 - 13785 mRNA_5417 0.20 -0.7
54,748 + 13785 mRNA_5417 0.27 +1.0
54,750 + 13785 mRNA_5417 0.28 +0.1
54,756 - 13785 mRNA_5417 0.28 +0.5
54,792 - 13785 mRNA_5417 0.29 +0.4

Or see this region's nucleotide sequence