Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5420

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13787 and 13788 are separated by 350 nucleotides13788 and 13789 are separated by 449 nucleotides mRNA_5419: 13787 - Interpro Cut8, nuclear proteasome tether protein, at 58,738 to 60,106 13787 mRNA_5420: 13788 - Hypothetical Protein, at 60,457 to 62,427 13788 mRNA_5421: 13789 - Interpro Domain of unknown function (DUF5102) 0, at 62,877 to 64,571 13789

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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59,511 + 13787 mRNA_5419 0.56 +1.1
59,516 - 13787 mRNA_5419 0.57 +0.6
59,547 - 13787 mRNA_5419 0.59 +0.9
59,547 - 13787 mRNA_5419 0.59 +1.2
59,554 + 13787 mRNA_5419 0.60 -0.2
59,664 - 13787 mRNA_5419 0.68 +0.1
59,749 - 13787 mRNA_5419 0.74 +1.4
59,831 + 13787 mRNA_5419 0.80 +2.4
59,849 - 13787 mRNA_5419 0.81 +1.2
59,870 - 13787 mRNA_5419 0.83 +0.5
60,011 + +2.5
60,012 + +1.8
60,012 + -1.1
60,019 + +0.9
60,116 - -0.2
60,260 + -0.5
60,289 + -0.1
60,292 - +1.8
60,306 - +1.2
60,320 + +0.1
60,596 + +0.9
60,598 - +2.4
60,688 + 13788 mRNA_5420 0.12 -0.5
60,786 - 13788 mRNA_5420 0.17 -0.0
60,788 + 13788 mRNA_5420 0.17 +1.4
60,861 - 13788 mRNA_5420 0.20 -0.1
60,882 - 13788 mRNA_5420 0.22 +0.8
60,988 - 13788 mRNA_5420 0.27 -0.6
61,048 - 13788 mRNA_5420 0.30 -1.0
61,086 + 13788 mRNA_5420 0.32 -0.5
61,169 - 13788 mRNA_5420 0.36 -1.8
61,321 - 13788 mRNA_5420 0.44 -0.3
61,470 - 13788 mRNA_5420 0.51 +2.7
61,511 - 13788 mRNA_5420 0.53 +0.3
61,521 + 13788 mRNA_5420 0.54 -0.0
61,653 + 13788 mRNA_5420 0.61 +0.5
61,706 + 13788 mRNA_5420 0.63 +0.4
61,706 + 13788 mRNA_5420 0.63 +1.3
61,738 + 13788 mRNA_5420 0.65 -1.5
62,065 - 13788 mRNA_5420 0.82 +0.7
62,073 + 13788 mRNA_5420 0.82 +1.1
62,219 - 13788 mRNA_5420 0.89 -0.0
62,219 - 13788 mRNA_5420 0.89 +0.5
62,220 + 13788 mRNA_5420 0.89 +2.3
62,377 - -0.5
62,610 - -0.6
62,613 + +0.3
62,710 - -0.2
62,743 - +1.2
62,750 - +0.1
62,752 + -0.5
62,753 - +0.8
62,759 - +0.3
62,765 - +0.6
62,769 + -0.3
62,773 - +0.8
62,774 + +0.1
62,780 + +0.1
62,882 + +1.6
63,037 - -0.4

Or see this region's nucleotide sequence