Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5440

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13807 and 13808 are separated by 672 nucleotides13808 and 13809 are separated by 208 nucleotides mRNA_5439: 13807 - Hypothetical Protein, at 99,970 to 100,789 13807 mRNA_5440: 13808 - Hypothetical Protein, at 101,462 to 101,965 13808 mRNA_5441: 13809 - Hypothetical Protein, at 102,174 to 103,025 13809

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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100,727 + -1.4
100,774 + -0.1
100,880 - +0.5
100,880 - +0.4
100,904 + -0.0
100,992 - +0.5
101,374 + +0.3
101,447 - -1.1
101,471 + +0.1
101,490 - +0.3
102,098 + +0.4
102,110 + -0.1
102,113 - -0.6
102,113 - +1.6
102,113 - -0.7
102,113 - -0.3
102,125 - -0.1
102,135 - +1.4
102,270 - 13809 mRNA_5441 0.11 +2.6
102,271 + 13809 mRNA_5441 0.11 +0.5
102,364 - 13809 mRNA_5441 0.22 -0.0
102,390 + 13809 mRNA_5441 0.25 +0.8
102,465 + 13809 mRNA_5441 0.34 +0.0
102,771 - 13809 mRNA_5441 0.70 -0.1
102,791 + 13809 mRNA_5441 0.72 +0.2
102,817 + 13809 mRNA_5441 0.75 +1.2
102,822 + 13809 mRNA_5441 0.76 +0.0

Or see this region's nucleotide sequence