Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5448

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13815 and 13816 are separated by 479 nucleotides13816 and 13817 are separated by 206 nucleotides mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113,720 to 116,134 13815 mRNA_5448: 13816 - BLAST GQ67_01206T0 [Komagataella phaffii], at 116,614 to 117,202 13816 mRNA_5449: 13817 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 117,409 to 118,509 13817

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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115,862 + 13815 mRNA_5447 0.89 -0.0
115,997 - +0.2
116,016 + +1.4
116,034 - +1.9
116,041 + -1.5
116,056 - +0.5
116,083 + -0.2
116,203 - +1.5
116,208 - +0.8
116,619 + -0.3
116,633 + -0.7
116,659 - +1.2
116,803 - 13816 mRNA_5448 0.32 -0.8
116,803 + 13816 mRNA_5448 0.32 -0.1
116,803 - 13816 mRNA_5448 0.32 -0.0
116,894 + 13816 mRNA_5448 0.48 -3.4
116,926 + 13816 mRNA_5448 0.53 +0.1
117,073 + 13816 mRNA_5448 0.78 +0.1
117,505 - -0.5
117,818 + 13817 mRNA_5449 0.37 +1.4
117,966 + 13817 mRNA_5449 0.51 +1.0
117,972 + 13817 mRNA_5449 0.51 +1.3
118,025 - 13817 mRNA_5449 0.56 -2.5
118,074 - 13817 mRNA_5449 0.60 -0.3
118,099 + 13817 mRNA_5449 0.63 -1.5

Or see this region's nucleotide sequence