Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5466

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13833 and 13834 are separated by 203 nucleotides mRNA_5465: 13833 - Hypothetical Protein, at 156,189 to 157,604 13833 mRNA_5466: 13834 - K05841 E2.4.1.173 sterol 3beta-glucosyltransferase, at 157,808 to 163,476 13834

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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157,124 - 13833 mRNA_5465 0.66 -1.7
157,294 + 13833 mRNA_5465 0.78 -0.2
157,560 - +0.3
157,561 + +0.2
158,158 + +0.5
158,223 - +0.5
158,350 + -0.7
158,450 + 13834 mRNA_5466 0.11 +2.5
158,683 + 13834 mRNA_5466 0.15 -0.2
158,807 - 13834 mRNA_5466 0.18 +0.3
158,870 + 13834 mRNA_5466 0.19 +0.9
159,108 - 13834 mRNA_5466 0.23 +1.7
159,158 - 13834 mRNA_5466 0.24 +0.1
159,233 + 13834 mRNA_5466 0.25 +0.3
159,246 + 13834 mRNA_5466 0.25 +0.2
159,326 + 13834 mRNA_5466 0.27 +1.2
159,530 - 13834 mRNA_5466 0.30 +0.3
159,707 - 13834 mRNA_5466 0.33 -2.4
159,892 - 13834 mRNA_5466 0.37 +0.0
160,120 - 13834 mRNA_5466 0.41 +1.1
160,298 - 13834 mRNA_5466 0.44 +2.0
160,319 + 13834 mRNA_5466 0.44 -0.2
160,396 - 13834 mRNA_5466 0.46 +0.6
161,096 + 13834 mRNA_5466 0.58 -0.4
161,171 - 13834 mRNA_5466 0.59 +1.7
161,203 + 13834 mRNA_5466 0.60 +0.6
161,330 - 13834 mRNA_5466 0.62 -0.5
161,457 + 13834 mRNA_5466 0.64 -1.8
161,478 + 13834 mRNA_5466 0.65 +0.4
161,599 - 13834 mRNA_5466 0.67 +0.4
161,798 - 13834 mRNA_5466 0.70 +1.0
161,804 + 13834 mRNA_5466 0.70 -0.4
161,816 + 13834 mRNA_5466 0.71 +1.3
162,046 + 13834 mRNA_5466 0.75 +0.9
162,061 + 13834 mRNA_5466 0.75 -0.8
162,102 + 13834 mRNA_5466 0.76 +1.1
162,387 - 13834 mRNA_5466 0.81 +1.1
162,938 - +0.6
163,068 + +0.9
163,075 + +0.9
163,119 + +0.4
163,220 + +0.2
163,377 - +2.7
163,385 - +1.7
163,386 + +0.1
163,413 - -1.1
163,479 - +1.4
163,521 + +0.5
163,523 + +2.2
163,676 + +1.8
163,680 + +0.3
163,692 + +0.7
163,699 + +1.5
163,809 + -0.2
163,818 + +0.4
163,831 + -0.2
163,835 - +0.2
163,855 - +1.9
163,857 - +0.3
163,863 + +1.7
163,943 - -0.2
163,961 + +1.1
163,992 + +1.9
163,997 + -0.1
163,998 + -0.2
164,407 - +0.8

Or see this region's nucleotide sequence