Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5478

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13845 and 13846 are separated by 151 nucleotides13846 and 13847 are separated by 396 nucleotides mRNA_5477: 13845 - K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11, at 188,584 to 192,714 13845 mRNA_5478: 13846 - SUPERFAMILY--SSF81383, at 192,866 to 194,409 13846 mRNA_5479: 13847 - KOG3070 Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing, at 194,806 to 195,878 13847

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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192,339 + -0.5
192,752 - -1.1
192,792 - +1.5
192,795 - -0.0
192,796 + +0.5
192,800 + +1.0
192,816 - +0.0
192,822 + -1.0
192,823 + +0.4
192,957 - -0.7
192,962 + +0.7
193,945 - 13846 mRNA_5478 0.70 -0.3
194,019 + 13846 mRNA_5478 0.75 +0.5
194,111 + 13846 mRNA_5478 0.81 -1.2
194,225 + 13846 mRNA_5478 0.88 -0.2
194,534 - +1.2
194,717 - -1.6
194,883 - +1.0
194,977 + 13847 mRNA_5479 0.16 -0.5

Or see this region's nucleotide sequence