Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5483

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13850 and 13851 are separated by 619 nucleotides13851 and 13852 are separated by 387 nucleotides mRNA_5482: 13850 - Hypothetical Protein, at 201,045 to 202,061 13850 mRNA_5483: 13851 - KOG1339 Aspartyl protease, at 202,681 to 205,111 13851 mRNA_5484: 13852 - K16612 HOOK1 protein HOOK1, at 205,499 to 209,113 13852

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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201,716 - 13850 mRNA_5482 0.66 -0.6
201,728 + 13850 mRNA_5482 0.67 -0.3
201,858 - 13850 mRNA_5482 0.80 +0.4
202,025 + -0.3
202,128 - +2.0
202,269 - +0.2
202,281 + +1.8
202,292 - -0.4
202,408 - -0.2
202,410 + +0.5
202,411 + +0.9
202,413 + +0.3
202,424 + -0.3
202,431 + +0.1
202,585 + -2.4
202,601 - +0.1
202,729 - -1.4
202,739 + -1.4
202,742 - +0.4
202,885 - -0.2
202,903 - +2.4
203,044 - 13851 mRNA_5483 0.15 -0.1
203,057 + 13851 mRNA_5483 0.15 -1.0
203,332 - 13851 mRNA_5483 0.27 +1.1
203,930 - 13851 mRNA_5483 0.51 -1.9
204,512 + 13851 mRNA_5483 0.75 -1.2
204,990 - +0.7
205,089 - +1.6
205,231 - +0.4
205,249 + +1.8
205,519 + +0.0
205,563 - +0.7
205,572 + +0.6
205,677 - +0.4
205,725 - -0.1
205,779 - +2.3
205,821 - +0.8
205,874 - 13852 mRNA_5484 0.10 -0.5
205,878 + 13852 mRNA_5484 0.10 -1.0
205,878 + 13852 mRNA_5484 0.10 -0.2
205,878 + 13852 mRNA_5484 0.10 +0.8
205,952 + 13852 mRNA_5484 0.13 +0.4
206,103 - 13852 mRNA_5484 0.17 +1.0

Or see this region's nucleotide sequence