Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5491

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13858 and 13859 are separated by 353 nucleotides mRNA_5490: 13858 - Hypothetical Protein, at 219,614 to 220,900 13858 mRNA_5491: 13859 - Hypothetical Protein, at 221,254 to 222,129 13859

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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220,274 + 13858 mRNA_5490 0.51 +0.8
220,298 + 13858 mRNA_5490 0.53 +1.1
220,301 - 13858 mRNA_5490 0.53 +0.2
220,408 - 13858 mRNA_5490 0.62 -0.1
220,657 + 13858 mRNA_5490 0.81 -0.1
220,938 + +0.9
220,990 - +0.4
220,990 - +0.3
221,161 + +0.2
221,173 + -0.5
221,178 - -0.3
221,408 + 13859 mRNA_5491 0.18 +1.5
221,741 + 13859 mRNA_5491 0.56 +0.9
222,009 + 13859 mRNA_5491 0.86 -0.6
222,319 + +2.2
222,336 - +1.1
222,449 - -1.0
222,469 - -0.9
222,556 - -1.3
222,792 - +0.1
222,903 + +1.6
222,906 + +0.1
222,918 + -0.2
222,930 + +0.1
222,937 + +2.0
222,969 + +0.0
223,050 - -0.0
223,050 - +0.1
223,060 + -0.4

Or see this region's nucleotide sequence