Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5593

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13960 and 13961 are separated by 63 nucleotides13961 and 13962 are separated by 261 nucleotides mRNA_5592: 13960 - HMMPfam-Alcohol acetyltransferase-PF07247,SUPERFAMILY--SSF52777, at 461,599 to 463,064 13960 mRNA_5593: 13961 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 463,128 to 464,888 13961 mRNA_5594: 13962 - K07943 ARL2 ADP-ribosylation factor-like protein 2, at 465,150 to 466,141 13962

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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462,286 - 13960 mRNA_5592 0.47 -0.6
462,330 + 13960 mRNA_5592 0.50 -2.3
462,577 - 13960 mRNA_5592 0.67 +0.4
462,587 - 13960 mRNA_5592 0.67 -0.5
463,027 + +1.1
463,145 - +0.4
463,458 - 13961 mRNA_5593 0.19 -1.5
463,588 + 13961 mRNA_5593 0.26 +0.7
463,597 + 13961 mRNA_5593 0.27 -0.6
463,734 - 13961 mRNA_5593 0.34 +0.4
463,875 + 13961 mRNA_5593 0.42 +0.4
464,044 - 13961 mRNA_5593 0.52 -1.2
464,061 + 13961 mRNA_5593 0.53 +0.5
464,184 + 13961 mRNA_5593 0.60 -1.3
464,274 + 13961 mRNA_5593 0.65 -1.3
464,286 + 13961 mRNA_5593 0.66 +0.7
464,289 - 13961 mRNA_5593 0.66 +0.1
464,345 - 13961 mRNA_5593 0.69 +1.2
464,609 + 13961 mRNA_5593 0.84 -0.3
464,645 + 13961 mRNA_5593 0.86 +0.6
464,779 - -1.3
464,800 + -1.6
464,898 + +0.2
464,917 - -0.5
464,925 + -1.0
464,926 + -0.5
464,928 + +0.7
464,931 - -0.8
464,935 - +0.8
464,952 - +0.2
465,074 - -0.9
465,084 + +0.7
465,087 + +0.6
465,098 + -0.4
465,217 + +0.2
465,232 + +0.4

Or see this region's nucleotide sequence