Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5636

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14003 and 14004 are separated by 273 nucleotides14004 and 14005 are separated by 290 nucleotides mRNA_5635: 14003 - HMMPfam-Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y-PF15159, at 564,046 to 564,667 14003 mRNA_5636: 14004 - BLAST Regulator of phospholipase D SRF1 [Hypsizygus marmoreus], at 564,941 to 566,584 14004 mRNA_5637: 14005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 566,875 to 570,624 14005

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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563,984 - +0.0
564,021 - -0.1
564,409 - 14003 mRNA_5635 0.58 -2.4
564,705 + +0.4
564,715 - -0.0
564,716 + +0.8
564,720 + -0.3
564,835 - +0.8
564,870 - +0.8
564,987 - -0.2
565,166 + 14004 mRNA_5636 0.14 +0.6
565,328 - 14004 mRNA_5636 0.24 +0.3
565,865 - 14004 mRNA_5636 0.56 -0.3
565,890 + 14004 mRNA_5636 0.58 +0.5
566,035 - 14004 mRNA_5636 0.67 -0.4
566,039 + 14004 mRNA_5636 0.67 -0.1
566,040 + 14004 mRNA_5636 0.67 -0.1
566,196 + 14004 mRNA_5636 0.76 -2.3
566,197 + 14004 mRNA_5636 0.76 -0.3
566,354 - 14004 mRNA_5636 0.86 -0.0
566,364 + 14004 mRNA_5636 0.87 -0.6
566,483 - -2.3
566,500 + +1.6
566,662 + -0.6
566,673 + +1.1
566,789 - +1.9
566,822 - +0.6
567,038 - +1.0
567,375 + 14005 mRNA_5637 0.13 -0.0

Or see this region's nucleotide sequence