Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5711

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14078 and 14079 are separated by 202 nucleotides14079 and 14080 are separated by 257 nucleotides mRNA_5710: 14078 - K03963 NDUFB7 NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 7, at 747,522 to 748,410 14078 mRNA_5711: 14079 - KOG4654 Uncharacterized conserved protein, at 748,613 to 751,704 14079 mRNA_5712: 14080 - K03253 EIF3B translation initiation factor 3 subunit B, at 751,962 to 754,544 14080

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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748,657 - -0.0
748,797 + +1.5
748,807 + +0.9
748,919 - -1.2
748,927 - 14079 mRNA_5711 0.10 +1.0
749,100 + 14079 mRNA_5711 0.16 -0.9
749,426 + 14079 mRNA_5711 0.26 +1.1
749,578 + 14079 mRNA_5711 0.31 +0.6
749,628 + 14079 mRNA_5711 0.33 -0.2
750,108 + 14079 mRNA_5711 0.48 -0.3
750,366 + 14079 mRNA_5711 0.57 +0.5
750,391 - 14079 mRNA_5711 0.58 +0.2
750,392 + 14079 mRNA_5711 0.58 -1.0
750,832 + 14079 mRNA_5711 0.72 -0.2
751,098 - 14079 mRNA_5711 0.80 +0.0
751,110 - 14079 mRNA_5711 0.81 +0.4
751,253 - 14079 mRNA_5711 0.85 +0.8
751,266 + 14079 mRNA_5711 0.86 +0.3
751,416 - -1.0
751,443 - -0.7
751,564 - +0.9
751,569 - +1.0
751,587 + +0.6
751,593 + +1.0
751,601 - +1.1
751,703 - +0.4
751,713 + +1.0
751,721 + -1.1
751,723 - +0.0
751,723 + -0.0
751,866 - +0.0
751,867 - +0.3

Or see this region's nucleotide sequence