Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5748

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14115 and 14116 are separated by 319 nucleotides14116 and 14117 are separated by 124 nucleotides mRNA_5747: 14115 - HMMPfam-F-box-like-PF12937, at 849,321 to 849,879 14115 mRNA_5748: 14116 - K12260 SRX1 sulfiredoxin, at 850,199 to 850,740 14116 mRNA_5749: 14117 - K14863 YTM1, WDR12 ribosome biogenesis protein YTM1, at 850,865 to 852,979 14117

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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849,219 + +2.5
849,515 - 14115 mRNA_5747 0.35 +1.5
849,640 - 14115 mRNA_5747 0.57 +0.4
849,661 - 14115 mRNA_5747 0.61 +1.7
849,776 - 14115 mRNA_5747 0.81 +0.7
849,802 + 14115 mRNA_5747 0.86 +0.4
849,804 - 14115 mRNA_5747 0.86 +1.1
849,949 - +0.6
849,964 - +0.4
849,969 + +0.3
850,105 + +0.6
850,260 + 14116 mRNA_5748 0.11 +0.5
850,261 - 14116 mRNA_5748 0.11 +0.7
850,263 + 14116 mRNA_5748 0.12 +0.5
850,280 + 14116 mRNA_5748 0.15 -0.2
850,291 - 14116 mRNA_5748 0.17 +0.0
850,558 - 14116 mRNA_5748 0.66 -0.8
850,567 + 14116 mRNA_5748 0.68 -0.8
851,304 + 14117 mRNA_5749 0.21 -1.1

Or see this region's nucleotide sequence